2024 Marine phage genomics

Marine phage genomics

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August undefined, 2024

WebGenomic DNA of phage PHS3 was extracted from concentrated phage particles using TIANamp virus DNA kit (Biopeony Beijing Co., Ltd., China). Phage genome was sequenced by Illumina Miseq 2×300 paired-end methods. Then raw data were ﬁltered and clean … Web1 dag geleden · Phages, which are often used ... The eluted genomic DNA was then stored at −20 °C before further use. 2.7.2. Illumina Sequencing of the V3–V4 Region of the 16S rRNA Gene. The V3–V4 hypervariable region of 16S rRNA gene was amplified using the forward primer ... (Plymouth Marine Laboratory, Plymouth, UK) ...

[PDF] Nucleic acids from the host bacterium as a major source of ...

Webthe previous year based on a hybridization study using phage genome probes. Cluster analysis of RFLP patterns and hybridization results also indicated that phages infecting the same or ge-netically related hosts, ... marine phages in terms of genetic diversity is lacking. This study describes the isolation and characterization of 62 WebImportantly, LC53 encodes 18 tRNAs, which likely compensate for differences in GC content between phage and host genomes. Overall, this study describes a newly isolated phage infecting Serratia sp. ATCC 39006 that expands the diversity of phages available to study phage-host interactions. KW - phage genome. KW - Serratia sp. ATCC39006 phage public transport to cbus stadium

Correction: Genomic diversity and ecological distribution of marine ...

WebIn addition to annotating a mycobacteriophage genome we cloned and had sequenced portions of a marine phage genome. Fall semester 2014. Start: Aug 25, 2014, End: Dec 14, 2014. PHAGES Sections in this Term. Biol 122 99. Details. Primary Instructor: Brian … Web24 mrt. 2024 · Genomic analyses reveal that MEP301 belongs to a novel phage group with all known relatives from phages assembled from metagenomic studies. We also identified some MEP301-type genomes from marine metagenomic datasets and conducted a … Web1 jul. 2005 · Marine phages are the most abundant and diverse form of life on the planet, and their genomes have been described as the largest untapped reservoir of genomic information. To date, however,... public transport to alton towers

[PDF] Nucleic acids from the host bacterium as a major source of ...

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Web24 mei 2024 · Since the pioneering study of Breitbart et al. in 2002 , marine phage genomics has been at the forefront in the field of viral metagenomics. Oceans cover over 70% of the Earth’s surface, produce over half of the oxygen in the atmosphere, and absorb the most carbon dioxide from it. Web28 sep. 2024 · Marine cyanophages demonstrate biogeographic patterns throughout the global ocean. Appl Environ Microbiol, 81: 441–452 Article Google Scholar Jiao N Z, Yang Y H. 2002. Ecological studies on Prochlorococcus in China seas. Chin Sci Bull, 47: 1243–1250 Article Google Scholar public transport ticketing projectWeb22 jun. 2016 · Analyzing the genome of the lytic marine phage, Roseophage SIO1, that infects the heterotrophic marine bacterium Roseobacter SIO67, shows that marine and nonmarine phages are genetically related but basic life histories may be significantly … public transport to chatsworth house

"Web5 feb. 2024 · This suggests that phages are implicated in the rise of pathogens in disturbed marine ecosystems. Background With a total estimated abundance of 10 31 particles, bacteriophages are the most abundant biological entities on Earth, and represent an untapped wealth of genetic information [ 1 ]. " - Marine phage genomics

Marine phage genomics

Correction: Genomic diversity and ecological distribution of marine ...

WebMarine phage genomics Paul and Sullivan 303 Figure 3 (a) Podoviridae ~500 bp Prochlorococcus P-SSP7 (complete) Uncultured cyanophage BAC9D04 Temperate Siphoviridae have been shown to possess some conservation in genomic organization, … Web24 jun. 2013 · A marine phage, designated HMO-2011, that can infect “ Candidatus Puniceispirillum marinum” strain IMCC1322 of the SAR116 clade was isolated from a surface seawater sample from the East Sea (Sea of Japan), where the host strain had …

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Web11 mrt. 2024 · Introduction. Damselfishes (Pomacentridae) are a group of small-bodied species found across all coral reef regions and most temperate marine systems where they are often the most visibly abundant fishes on the reef (Hiatt and Strasburg 1960; Allen 1991; Allen and Werner 2002; Bellwood and Wainwright 2002).This family includes more than … Web15 dec. 2024 · Availability of these newly isolated pelagiphages and their genome sequences will allow us to further explore their phage-host interactions and ecological strategies. Viruses that infect the globally abundant marine SAR11 bacteria …

Web14 apr. 2024 · We harvested phage from the previous cultures and sequenced PCR amplicons of the phage genome targets using Sanger sequencing. In the seed mutant (C2A) phage cultures, the phage retained the same seed mutation and did not develop … WebMarine viruses are the most abundant biological entity in the oceans, the majority of which infect bacteria and are known as bacteriophages. Yet, the bulk of bacteriophages form part of the vast uncultured dark matter of the microbial biosphere. In spite of the paucity …

WebMarine finfish aquaculture is affected by diverse infectious diseases, ... This study reports the isolation of Pseudomonas sp. J380 from infected wild cunners and its phenotypic, genomic, and transcriptomic … Web14 sep. 2024 · We used the double-agar layer method to isolate a novel Marinobacter marina bacteriophage, B23, from the surface water sample of the Bohai sea of China. There is some work to better understand the phage. The result of transmission electron microscopy revealed that B23 belongs to the family Siphoviridae with a head of 80 nm in …

Web7 jun. 2024 · PHS21 against Pseudoalteromonas is isolated from Qingdao offshore seawater. The phage was characterized and identified by morphological examination, stability, whole genome sequencing, and bioinformatics analysis. Morphological analysis …

Web20 jan. 2024 · Pseudoalteromonas, with a ubiquitous distribution, is one of the most abundant marine bacterial genera. It is especially abundant in the deep sea and polar seas, where it has been found to have a broad metabolic capacity and unique co-existence … public transport to bondi beachWeb11 apr. 2024 · Arbitrium phages use small peptides to communicate and coordinate the decision ... Javier and Zamora-Caballero, Sara and Quiles-Puchalt, Nuria and Marina, Alberto and Penadés, José R, Characterisation of a Unique Repression System ... Cell Chemical Biology (126) Cell Genomics (9) Cell Host & Microbe (168) Cell ... public transport to east midlands airportWebThe phage genome consisted of a linear, double-stranded 290,532 bp DNA molecule with a G + C content of 45.87%. Bioinformatic analyses predicted 318 open reading frames (ORFs), 80 of which had no similarity to protein sequences in current ... Very little is known about the processes of host–phage interaction in marine environments. public transport to gentingWebMarine phages are the most abundant biological entities in the oceans. They play important roles in carbon cycling through marine food webs, gene transfer by transduction and conversion of hosts by lysogeny. The handful of marine phage genomes that have been … public transport to huskissonhttp://www-personal.umich.edu/~duhaimem/pdfs/Duhaime_etal_2011b_phageGCDML.pdf public transport to lindisfarneWeb28 jan. 2024 · Marine bacteriophages frequently possess auxiliary metabolic genes (AMGs) that accelerate host metabolism during phage infection. The significance of AMGs in phage infecting the ecologically important Roseobacter clade, found predominantly in … public transport to etihad stadiumWeb11 apr. 2024 · These experiments highlight the orthogonality of Rap-Phr systems, especially within the same genome (Even-Tov, Omer Bendori, Pollak, et al., 2016). However, it is important to consider that these results have been observed using artificial laboratory conditions, and in particular, in vitro experiments include the testing of a very limited … public transport to disneyland paris