WebMar 13, 2024 · CBCVd was detected in three kumquat trees; one sequence was deposited in GenBank (OK539908) (Table S2). Genome sequencing studies and multiple alignments of HSVd sequences indicated that the sequence of K0S2 (OK030556) was 301 nucleotides in size and presented 100% identity with the USA isolate Cache100-6 (JX237456). The … WebJun 1, 2013 · Testing the presence of viroids in citrus budlings imported from different countries showed that CBCVd is the most common viroid in citrus budlings (79%), followed by CDVd (68%), HSVd (54%), CEVd (29%) and CBLVd (28%) . CDVd and CBCVd were detected in all citrus species which were tested and with a high frequency of detection in …
mRNAに基づく内部陽性制御を含むホップにおける柑橘類樹皮亀裂ウイロイド(CBCVd…
WebJun 11, 2024 · Citrus bark cracking viroid (CBCVd), previously called Citrus viroid IV, belongs to the genus Cocadviroid within the family Pospiviroidae.CBCVd has been identified as an important causative agent in citrus and hops. In this study, we obtained the full-length genomes of different variants of all detected citrus viroids from Pakistan through … WebJul 1, 2024 · A series of different software tools (Fig. 1) were used to systemically identify putative and CBCVd-responsive lncRNAs in the hop.As an integral step, all transcripts over 200 bp were aligned with the BLASTx (E-value cut-off of 1e −10, coverage ≥80% and identity ≥90%) searches against UniProtKB [52] and National center for biotechnology … high14 technologies ltd
Transcriptome sequencing reveals novel - PLOS
WebNov 10, 2014 · Both reconstructed sequences were the same, showing 100% identity with GenBank accession X07397. The second viroid species, CBCVd, was found only in the … WebMay 5, 2024 · The analysis of the expression profiling of the CBCVd-responsive hop TFs revealed a massive differential modulation, and the expression of the selected TFs was validated using qRT-PCR. Together, the comprehensive integrated analysis in this study provides better insights into the TF regulatory networks associated with CBCVd … WebSep 8, 2024 · Humulus lupulus (hop) plants are hosts to several viroids; two of them, HLVd and CBCVd, are interesting models for studying host-viroid interactions, due to the … how far is eganville from toronto